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Dr. Sen-Lin Tang 湯森林 |
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| Haloarchael Genomics; Microbial Genomics/Metagenomics; Microbial Biodiversity; Computational Biology |
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Playing Guitar
Fishing
Taking pictures
Cooking
Reading (biography and science fiction) |
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- Postdoctoral Research Fellow, School of Veterniary Science, University of Melbourne-2006
Ph.D. in Microbiology at University of Melbourne-2002
MSci in Microbiology at National Taiwan University-1993
BSci in Plant Pathology at National Chung-Hsing University-1991
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- Selected to join the Science Tour in Germany, 2012 (Biodiversity and Climate Change)
- NSC 優秀年輕學者研究計畫 2012-2015
- 大專院校獎勵特殊優秀人才_2012
- Selected as Significant Research Achievements of Academia Sinica, 2012 and a poster presented in 30th Academician Meeting.
- Selected as Significant Research Achievements of Academia Sinica, 2011
- 大專院校獎勵特殊優秀人才_2011
- Selected as Significant Research Achievements of Academia Sinica, 2010
- Selected as Significant Research Achievements of Academia Sinica 2009
- Travel scholarship for Ph.D. student, International Extremophiles Congress, 2000
Overseas Postgraduate Research Scholarship for Ph.D. student by Australian Federation, 1998-2002
Melbourne Research Scholarship for Ph.D. student by The University of Melbourne, 1998-2002
King’s College Scholarship for Taiwan Student ( University of London)—9/1997
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- Co Chief-in-Editor of Zoological Studies
- Associate Editor of ISRN Bacteriology
- Associate Editor of JIOMICS
- Member of Editorial board of TheScientificWorldJOURNAL
- Have been manuscript reviewers of Zoological Studies, Zoological Science, Virus Research, Archive of Virology, BMC Bioinformatics, BMC Genomics, BMC Microbiology, Genome Biology, PLOSone, Microbial Ecology and Nucleic Acids Research.
- Memeber of America Society for Microbiology
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- Wang, P. H., Leu, Y. L., Ismail, W., Tang, S. L., Tsai, C. Y., Chen, H. J., Kao, A. T., and *Chiang, Y. R., 2013, “The anaerobic and aerobic cleavage of the steroid core ring structure by Steroidobacter denitrificans. ”, JOURNAL OF LIPID RESEARCH, 54:1493-1504.
- Tseng, CH, Tang SL, Chan CK, Hsu AL, and Halgamuge SK: Binning sequences using very sparse labels within a metagenome. In: Nelson K. (Ed.) 2013, Encyclopedia of Metagenomics: SpringerReference (www.springerreference.com). Springer-Verlag Berlin Heidelberg
- Kate Porter, Sen-Lin Tang, Chung-Pin Chen, Pei-Wen Chiang, Mei-Jhu Hong, and Mike Dyall-Smith,2013, PH1: an Archaeovirus of Haloarcula hispanica Related to SH1 and HHIV-2, Archaea, vol. 2013, doi:10.1155/2013/456318.
- Silk Yu Lin, Wung Yang Shieh, Jwo-Sheng Chen, Sen-Lin Tang*, 2013 Complete Genome Sequence of Simiduia agarivorans SA1T, a marine bacterium able to degrade a variety of polysaccharides, Genome Announcements, vol. 1 no. 1 e00039-12
- Hsiu-Hui Chiu, Andreas Mette, Jia-Ho Hsu, and Sen-Lin Tang*, 2013,
Bacterial Distribution in the Epidermis and Mucus of the Coral Euphyllia glabrescens by CARD-FISH, Zoological Studies, accepted.
- Cheng, T.-W. , Y.-H. Chang, S.-L. Tang, C.-H. Tseng, P.-W. Chiang, K.-T. Chang, C.-H. Sun, Y.-G. Chen, H.-C. Kuo, C.-H. Wang, P.-H. Chu, S.-R. Song, P.-L. Wang, and L.-H. Lin, 2012, Metabolic stratification driven by surface and subsurface interactions in a terrestrial mud volcano, ISME Journal, doi: 10.1038/ismej.2012.61.
- I. Saeed*, S-L. Tang*, S.K. Halgamuge,2012, “Unsupervised discovery of microbial population structure within metagenomes using nucleotide base composition”, Nucleic Acids Research, 40(5):e34. doi: 10.1093/nar/gkr1204
- Ching-Hung Tseng, Chon-Kit Kenneth Chan, Arthur L. Hsu, Saman K. Halgamuge, Sen-Lin Tang*, 2011, Binning metagenomic sequences using Seeded GSOM, Edited by Frans J. de Bruijn, Handbook of Molecular Microbial Ecology I, Metagenomics and Complementary Approaches, Wiley-Blackwell, pp369-378.
- Lan-Feng Fan, Sen-Lin Tang*, Chang-Po Chen and Hwey-Lian Hsieh*, 2011, Diversity and Composition of Sulfate- and Sulfite-Reducing Prokaryotes as Affected by Marine-Freshwater Gradient and Sulfate Availability, Microbial Ecology, DOI: 10.1007/s00248-011-9912-x (* corresponding authors)
- Shurong Zheng, Richard A. Johnson, Yi-Feng Chang, Kunio Shimizu,
Chia-Chang Wang, Sen-Lin Tang, and Grace S. Shieh 2011, Modeling And Comparing the Organization of Circular Genomes, Bioinformatics, doi: 10.1093/bioinformatics/btr049
- Sen-Lin Tang#*, Mei-Jhu Hong#, Ming-Hui Liao, Wann-Neng Jane, Pei-Wen Chiang, Chung-Bin Chen, and Chaolun Allen Chen (2011) Bacteria associated with an encrusting sponge (Terpios hoshinota) and the corals partially covered by the sponge. Environmental Microbiology, doi:10.1111/j.1462-2920.2010.02418.x .(# the first author, * corresponding author)
- J.-T. Wang, P.-J Meng, E. Sampayo, S.-L. Tang, C. A. Chen (2011) Photosystem II breakdown induced by reactive oxygen species (ROS) in the freshly-isolated Symbiodinium of Montipora (Scleractinia; Acropordiae) Marine Ecology Progress Series. doi:10.3354/meps08913
- Chung-Pin Chen, Ching-Hung Tseng, Chaolun A. Chen, Sen-Lin Tang, 2011, The dynamics of microbial parternships in the coral Isopora palifera, ISME Journal, 2011 Apr;5(4):728-40
- Sen-Lin Tang, Bill CH Chang and Saman K Halgamuge, 2010, Gene functionality’s influence on the second codon: a large-scale survey of second codon composition in three domains, Genomics, doi:10.1016/j.ygeno.2010.04.001. (*Cover story of the journal issue)
- Lin YT, Huang YJ, Tang SL, Whitman WB, Coleman DC, Chiu CY., 2010,
Bacterial Community Diversity in Undisturbed Perhumid Montane Forest Soils in Taiwan. Microbial Ecology, doi 10.1007/s00248-009-9574-0
- Mei-Jhu Hong, Yi-Ting Yu, Chao-Lun A. Chen, Pei-Wen Chiang, and Sen-Lin Tang , 2009, Influence of species specificity and other factors on bacteria associated with Stylophora pistillata in Taiwan. Applied and Environmental Microbiology, doi:10.1128/AEM.01418-09 (The sequence dataset can be downloaded from the webpage: http://biodiv.sinica.edu.tw/~sltang/pages/research_detail.php?title=rt&cate=&rp=1&id=20100912113552)
- Katri M Hallamaa, Sen-Lin Tang, Nino Ficorilli and Glenn F Browning, 2008, Differential expression of lipoprotein genes in Mycoplasma pneumoniae after contact with an epithelial lung carcinoma cell line, and under oxidative and acid stress, BMC Microbiology 8:124
- Jason Li, S. K. Halgamuge, Bill C. H. Chang, Sen-Lin Tang, 2008, Genome classification by gene distribution: an overlapping subspace clustering approach, BMC Evolutionary Biology, 8:116, doi:10.1186/1471-2148-8-116.
- Chon-Kit Kenneth Chan , Arthur L. Hsu , Saman K. Halgamuge and Sen-Lin Tang, 2008, Binning sequences using very sparse labels within a metagenome, BMC Bioinformatics, 9:215, doi:10.1186/1471-2105-9-215.
- Yu-Hsiang Lin, Bill C. H. Chang, Pei-Wen Chiang, and Sen-Lin Tang, 2008, Questionable 16S ribosomal RNA gene annotations are frequent in completed microbial genomes, Gene, 416:44-47.
- Chon-Kit Kenneth Chan, Arthur L. Hsu, Sen-Lin Tang and Saman K. Halgamuge. 2008, Using Growing Self-Organising Maps to Improve the Binning Process in Environmental Whole Genome Shotgun Sequencing, Journal of Biomedicine and Biotechnology , 2008:513701.
- Sen-Lin Tang, Bill CH Chang, Hsiang-Fu Yu, and Ming-Hsin An, 2007, Diversity of halovarchaeal viruses of Australia hypersaline environments: A review. The proceedings of International Symposium on Soil Biodiversity and Ecology, Taiwan, p81-90.
- Ming-Hui Liao, Sen-Lin Tang, Chia-Ming Hsu, Kou-Chang Wen, Henry Wu, Wen-Ming Chen, Jih-Temg Wang, Pei-Jie Meng, Wen-Hong Twan, Chang-Feng Dai, Keryea Soong, and Chaolun Allen Chen, The “ Black Disease” of reef-building corals at Green Island, Taiwan – Outbreak of a cyanobacteriospong, Terpios hoshinota (Suberitidae; Hadromerida), 2007, Zoological Studies, 46: 520.
- Li, J., Halgamuge, S. K. and Kells, C. I., Tang, S. L,2007, Gene function prediction based on genomic context clustering and discriminative learning: An application to bacteriophages BMC Bioinformatics, 8(Suppl 4):S6.
- Hallamaa, K., Browning, G. and Tang, S. L., 2006, Analysis of lipoprotein multigene families in Mycoplasma pneumoniae strain M129. Journal of Bacteriology, 188:5393-5399.
- Chang, B., Halgamuge, S. and Tang, S.-L., 2006, Analysis of SD sequences in completed prokaryotic genomes: Non SD-led genes are as common as SD-led genes. Gene 373:90-99.
- Johannes Reinhard, Chon-Kit Kenneth Chan, Saman Halgamuge, Sen-Lin Tang and Rudolf Kruse, Region Identification on a Trained Growing Self-Organizing Map for Sequence Separation between Different Phylogenetic Genomes", BIOINFO 2005, Proceedings of the 2005 International Joint Conference of InCoB, AASBi and KSBI, pp124-129
- Tang, S.-L., Fisher, C., Ngui, K., Nuttall, S.D., and Dyall-Smith, M. L. 2004 Genome sequences of the Head-Tailed haloviruses HF1 and HF2 (Chapter 17), Halophilies Microoganisms (A. Ventosa Ed.), Springer-Verlag Berlin Heidelberg, chpt 11, p177-191.
- Tang, S.-L., S. Nuttall, and M. Dyall-Smith., 2004, Haloviruses HF1and HF2: genomic organizations and an unusual recombination. J. Bacteriology, 186:2810-2817.
- Dyall-Smith, M., S.-L. Tang, and C. Bath, 2003, Haloarchaeal viruses: how diverse are they?, Research in Microbiology, 154: 309-313.
- Hsu, A., S.-L. Tang, and S. Halgamuge, 2003. An unsupervised dynamic self-organizing map approach to class discovery and marker gene identification in microarray data. Bioinformatics. 19:2131-2140.
- Tang, S.-L., C. Fisher, K. Ngui, S. Nuttall and M. Dyall-Smith, 2002. HF2: a lytic, tailed haloarchaeal virus with a mosaic genome. Molecular Microbiology. 44: 283-296.
- J. Filee, P. Forterre, S.-L. Tang and J. Laurent. 2002. Evolution of DNA polymerase families: evidence for multiple gene exchange between cellular and viral protein. Journal of Molecular Evolution. 54:763-773.
- Keith Tolley, Deborah Maddocks, Shan Gyles, Zoe Siclair, Sen-Lin Tang, Mike Dyall-Smith,David Hough and Michael Danson. 2000. 2-Oxoacid dehygrogenase mutlienzyme complexes in the halophilic Archaea: Gene sequence and protein predictions. Microbiology. 146:1061-1069.
- Valery Y. Tarasov, Michael G. Pyatibratov, Sen-Lin Tang, Michael Dyall-Smith and Oleg V. Fedorov. 2000. Role of flagellins from A and B loci in flagella formation of Halobacterium salinarum. Molecular Microbiology. 35: 69-78.
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- Ching-Hung Tseng, Pei-Wen Chiang, Fuh-Kwo Shiah, Jia-Rong Liou, Yi-Lung Chen, Ting-Chang Hsu, Sen-Lin Tang. Comparative Metagenomics on a Typhoon Impacted Freshwater Ecosystem. (2012) International Symposium on Evolutionary Genomics and Bioinformatics, Best Poster Award, 3rd place.
- Sen-Lin Tang*, Ching-Hung Tseng, Pei-Wen Chiang, Jia-Rong Liou, Yi-Long Chen, Ting-Chang Hsu, and Fuh-Kwo Shiah, 2012, Metabolic potential of microbial community in a subtropical freshwater little changed by a level-5 typhoon attack, 14th ISME Meeting, Copenhagen, Demark.(274A)
- Sen-Lin Tang,Cheng-Yu Chen, Ching-Hung Tseng, Jia-Ho Hsu, Hsing-Ju Chen, Differential metabolisms in Terpios hoshinota by comparative transcriptomics approach, 12th International Coral Reef Symposium, Cairns, Australia.p160 (quick speech).
- Silk Yu Lin, Wung Yang Shieh, Ching-Hung Tseng, Wann-Neng Jane, Su-Hsin Huang, Pei-Wen Chiang, Sen-Lin Tang, 2011, Life cycle of Simiduia agarivorans SA1T and its polysaccharide metabolism, Workshop of Marine Evolutionary Genomics and Genetics, Academia Sinica, Taiwan
- Cheng-Yu Yang, Ching-Hung Tseng, Jia-Ho Hsu, Hsin-Ju Chen, Chi-Chun Chen, Sen-Lin Tang, 2011, Differential metabolisms in an encrusting sponge (Terpios hoshinota) by comparative transcriptomics approaches, Workshop of Marine evolutionary genomics and genetics, Academia Sinica, Taiwan
- Sen-Lin Tang, Metagenomics: the gate toward the largest gene reservoir, FTFoS Symposium, Nice, France, June 2011, p28 (Invited speech)
- Sen-Lin Tang, 2011 Change in microbial community influenced by typhoons, Annual meeting of Bacteriology, p11 (Invited speech), Taiwan.
- Pei-Wen Chiang and Sen-Lin Tang, 2010, Vertical distribution of bacterial communities in South China Sea, 國科會海洋學門海洋年會.
- Ching-Hung Tseng, Chung-Pin Chen, Hung-Chun Lai, Pei-Wen Chiang, Kai-Ti Chang, Sen-Lin Tang. (2010) A combinatory method maximizes taxonomy resolution in bacterial community analysis. 2010 General Assembly for the Establishment of Taiwan Society of Microbial Ecology and the International Conference, page 42. Keelung, Taiwan
- Hung-Chun Lai, Pei-Wen Chiang, Ching-Hung Tseng, Sen-Lin Tang. (2010) The diversity and compositions of stratified microbial assemblages in the interior of the northern South China Sea. 2010 General Assembly for the Establishment of Taiwan Society of Microbial Ecology and the International Conference, page 42, Keelung, Taiwan (the poster awarded by the conference)
- Hsiu-Hui Chiu, Andreas Mette, Sen-Lin Tang. (2010) Bacterial distribution in epidermis and mucus of Euphyllia glabrescens by CARD-FISH. 2010 General Assembly for the Establishment of Taiwan Society of Microbial Ecology and the International Conference, page 40, Keelung, Taiwan
- Ting-Wen Cheng, Pei-Ling Wang, Chih-Hsien Sun, Sen-Lin Tang, Yung-Hsin Chang, Pao-Hsuan Chu, Li-Hung Lin (2010) Microbial communities associated with methane transformation in a terrestrial mud volcano, southwestern Taiwan. 2010 General Assembly for the Establishment of Taiwan Society of Microbial Ecology and the International Conference, page 43, Keelung, Taiwan
- Hsiu-Hui Chiu, Andreas Mette and Sen-Lin Tang, 2010, Bacterial distribution in epidermis and mucus of Euphyllia glabrescens by CARD-FISH, Taiwan Society of Microbial Ecology Conference, Keelung , Keelung, Taiwan
- Hsing-Ju Chen, Sen-Lin Tang and Hsing-Juh Lin. (2009) Prokaryotic community profile of wetland sediment. Abstract of Annual Symposium of Fisheries Society of Taiwan. p144.
- 湯森林、廖敏惠、洪美珠、陳昭倫 (2008) 綠島Terpios hoshinota-like 海綿內微生物相鑑定及比較 2008年台灣珊瑚礁現況及保育進展，page 16
- 廖敏惠、湯森林、陳昭倫 (2008)The bacterial community of cyanobacterisponge, Terpios hoshinota, in the Green Island, Taiwan.。2008年台灣珊瑚礁現況及保育進展，page 21.
- Ming-Hui Liao, Sen-Lin Tang, Chaolun Allen Chen. (2008) Investigation into the bacterial community of cyanobacterisponge in Green Island, Taiwan. 2008動物行為研討會.
- Ming-Hui Liao, Sen-Ling Tang, Chaolun Allen Chen. (2007) Coral deseases in Taiwan. 2007動物行為寄生態研討會-中國生物學會聯合年會.
- Sen-Lin Tang, Bill CH Chang, Hsiang-Fu Yu, and Ming-Hsin An (2007) Diversity of halovarchaeal viruses of Australia hypersaline environments: A review. The proceedings of International Symposium on Soil Biodiversity and Ecology, Taiwan, p81-90
- Ming-Hui Liao, Sen-Ling Tang, Chaolun Allen Chen. (2007) The "Black Disease" of reef-buiding corals at Green Island, Taiwan- outbreak of a Cyanobacteriosponge, Terpios hoshinota (Suberitidae; Hadromerida). Reefsite.
- Chon-Kit Chan, Arthur Hsu, Sen-Lin Tang, Sama Halgamuge, 2007, A method for evaluating quality of clustering DNA fragments encoded in different nucleotide frequencies, Proceedings of the FBIT 2007 International Conference, p60-63, Jeju Island, Korea.
- Katri Hallamaa, Glenn Browning, G., and Sen-Lin Tang, 2006, Analysis of lipoprotein multigene families in Mycoplasma pneumoniae strain M129. 16th Congress of the International Organisation for Mycoplasmology in Cambridge, UK
- Ming-Hui Liao, Sen-Ling Tang, Chaolun Allen Chen. (2006) Coral disease in Taiwan: a primary probe. 2006台灣珊瑚礁年會. Taiwan
- Sen-Lin Tang, S. Nuttall, K. Ngui, C. Fisher and M. Dyall-Smith, The genome sequences to
two closely haloviruses (HF1 and HF2) show a remarkable recombination event, 2001,
Halophiles 2001, International Congress on Halophilic Microorganisms, L39
- Sen-Lin Tang, C. Fisher, K. Ngui, S. Nuttall and M. Dyall-Smith, 2000, HF2: a 77kb ds
DNA virus of haloarchaea, International Conference Extremophiles 2000 in Hamburger
- M. Dyall-Smith, C. Bath, S.-L. Tang, 2000 ‘Haloarchaeal viruses’, Fondation des Trelles
‘Origin, diversity and evolution of viruses’, France
- C. Bath, C.-M. Fisher, K. Nugi, S.-L. Tang and Dyall-Smith, 1999, Halobacterial viruses
isolated from Australian hypersaline waters. Gorden Conference, Archaea: Ecology,
Metabolism, and Molecular Biology, USA
- C. Bath, Sen-Lin Tang, Katrina Ngui and Mike Dyall Smith, 1999, Molecular Biology of
New Haloarchaeal viruses, X I th International Congress of Virology, p15
- Dai, H., Y.-S. Lo, L.-W. Lee, S.-H. Chen, S.-L. Tang and K.-S. Chiang, 1996 Biogenesis of Plant Mitochondria: Baby Mitochondrial Development , Annual Report of Institute of Botany, p13-14
- Wang, W.-B., S.-L. Tang, and S.-P., 1993, Transcription Repression and Activation by the SV40 Small t Antigen, 1993 Tumor virus Meeting on Papovavirus. Papillomavirus and Adenovirus, p91
- Wang, W.-B., H.-P. Tai, S.-L. Tang and Y.-C. Liu, 1993, Transcriptional Repression and Activation by SV40 Small Antigen. The 27th Annual Meeting of the Chinese Society of Microbiology, p64
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